rs46785679 SNP Detail

Summary

• ID
  rs46785679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA GCACATGAAA GGTAAAGCCA
  Y
  CCCCTCCCCA AAGTGACACA GTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132681539	ENSMUSSNP6485699	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323821026	CHEV_11_96406256	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46785679					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435768 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1433 bp proximal
Rr252638	regulatory region 252638	1169 bp distal
Rr252639	regulatory region 252639	834 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	219 bp downstream
Tssr104544	transcription start site region 104544	431 bp upstream
Tssr104545	transcription start site region 104545	484 bp upstream
Tssr104546	transcription start site region 104546	492 bp upstream
Tssr104547	transcription start site region 104547	534 bp upstream
Tssr104548	transcription start site region 104548	628 bp upstream
Tssr104549	transcription start site region 104549	641 bp upstream
Tssr104550	transcription start site region 104550	699 bp upstream
Tssr104551	transcription start site region 104551	727 bp upstream
Tssr104552	transcription start site region 104552	748 bp upstream