rs46787278 SNP Detail

Summary

• ID
  rs46787278
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136057299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTCAGGAG ACACAGAGAG GAAAGCTCTG
  GTGGCATTTC CCAGCAGCGG AGCTCTGAGT CAGAAGGTCA CCTACTGCTG GAAGTCTGAG
  CAGACCTATG GCAAACAGGA AGCTAGAGTT AAGTACCAAA GAAGTCCAGG GATGGGAGGG
  W
  GGGGGAACAG TTTAGGTAAA AACACATTAT CTTTCAGGAG AGCTAAGCCT GTTGCTTGTG
  GCACCCCCGG GCAAAGCTGG GCCAATCCAG CTCCCTTCCC CACAGGCACG CCCTTAGAGG
  AATCCCTTAG AGGAATCGGG ACGCCTAGAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145553090	ENSMUSSNP2504393	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss319994785	CHEV_1_138026138	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46787278					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136057299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1556 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	1828 bp upstream
Rr396320	regulatory region 396320	1549 bp upstream
Rr419367	regulatory region 419367	760 bp distal
Rr419368	regulatory region 419368	444 bp proximal
Rr419369	regulatory region 419369	1612 bp proximal
Rr419370	regulatory region 419370	1837 bp proximal
Tssr9041	transcription start site region 9041	1802 bp upstream
Tssr9042	transcription start site region 9042	1821 bp upstream
Tssr9043	transcription start site region 9043	1850 bp upstream
Tssr9044	transcription start site region 9044	1882 bp upstream
Tssr13914	transcription start site region 13914	1614 bp downstream