rs46788935 SNP Detail

Summary

• ID
  rs46788935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53531679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG TTATTAAGAT GAACGAAATT
  R
  GGCCGGGCAT GGCGGTACAG GCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61805831	NES17722882	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	G	G	A	G	G	G		A	A	A	A		G
ss149013900	ENSMUSSNP6379516	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G						G
ss324341590	CHEV_13_53473012	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46788935					SNP	G	G	A	G	G	G	A	G	G	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805831	NES17722882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53531679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	64 bp distal
Rr403780	regulatory region 403780	40 bp downstream
Rr480032	regulatory region 480032	within coordinates
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	278 bp upstream
Tssr122583	transcription start site region 122583	270 bp upstream