rs46789134 SNP Detail

Summary

• ID
  rs46789134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCCATCT TGGCTGCTAG
  GAATTGAGTG CAGCTCCTCT GCGGGAGTTT TTAACTGCTG AGCCATCTCT CCAGCCCTGC
  CAGGTCCCTT TCAAGGCCAA TACAATTCAT ATAGTTAACA GAAATGTACT TTAGATACAC
  TTTTGCATTA GGTTTCTGCC GTTTTCCGTG GCTCTTTTTC CAGTACCACA TCCTGTCTCT
  Y
  GTGTTTCCTT TTTCTATTCT TTAAATGTAT CTATACCCTA AGCTTATGAG TCCTCAGATT
  TCTAGAGATT TGCGTTTTAT TTCTAGATGA GTCGTCACAG CTTGCTTCAT GCCCTCGTCC
  CTCCATGCTC CTCTTTCTGG AGAAGTTTCT GCCTTTTCTC TTAGTTGTCC TTACTTTCGA
  TGTCAAGACA GCACGGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148004004	ENSMUSSNP1472103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320565085	CHEV_2_153606540	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46789134					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1450 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	1071 bp upstream
Rr567738	regulatory region 567738	1082 bp distal
Rr567739	regulatory region 567739	981 bp distal
Tssr20916	transcription start site region 20916	1569 bp downstream
Tssr20917	transcription start site region 20917	1553 bp downstream
Tssr20918	transcription start site region 20918	1525 bp downstream