rs46790162 SNP Detail

Summary

• ID
  rs46790162
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACTAGA CCAGGAGTGA
  GATGATCTTG GGCAGAGGGC AGAAGAACAT GGTATCCAAG AGATTCTGAG GCCTTGTCTA
  TAAAGTCTGA GCGCCACTGG TCTTTCTTTT TAAAGTTCTC TTTCAACCTT ATAGTGAGGA
  AATTCATCTT TCTTAAAACT TGTCTGTATT TATTTATCCA TTAGCATAAC TTTAGAGTAT
  A
  TGGATTCAAC CTGACTTTAT TATTATTTAG CATATTCTTT AATGTAGAGA TGGTAGATTT
  TTTTTTTTTT ATTTAGGAAA TCGGCTAGCT TTTCGTTAAT TTATTTACAT TTTCTTTTTT
  TTTTATTTGC ATGAGGTGGC TAGTTAACTT TATACAGTAT AGATATTTTA ATGCTCTTCT
  TGCTCTAATG TAATGGGTTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147206144	ENSMUSSNP2426850	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46790162					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	949 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1128 bp upstream
Rr397176	regulatory region 397176	839 bp upstream
Rr562509	regulatory region 562509	638 bp proximal
Rr562510	regulatory region 562510	1139 bp proximal
Rr562511	regulatory region 562511	1244 bp proximal
Rr562512	regulatory region 562512	1283 bp proximal
Rr562513	regulatory region 562513	1671 bp proximal
Tssr19307	transcription start site region 19307	1052 bp upstream
Tssr19308	transcription start site region 19308	1077 bp upstream
Tssr19309	transcription start site region 19309	1120 bp upstream
Tssr19310	transcription start site region 19310	1160 bp upstream
Tssr19311	transcription start site region 19311	1204 bp upstream