rs46790672 SNP Detail

Summary

• ID
  rs46790672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99769220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACC ACACCCTTAA GAACCTGGGT
  Y
  TGGCCGGGCG GTGGTGGCAC ACGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145524275	ENSMUSSNP6026829	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46790672					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99769220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	839 bp proximal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	within coordinates
Rr400466	regulatory region 400466	1417 bp upstream
Rr652064	regulatory region 652064	620 bp proximal
Rr652065	regulatory region 652065	1443 bp proximal
Tssr73730	transcription start site region 73730	510 bp downstream
Tssr73731	transcription start site region 73731	1033 bp downstream
Tssr73732	transcription start site region 73732	1419 bp downstream
Tssr73733	transcription start site region 73733	1433 bp downstream
Tssr73734	transcription start site region 73734	1499 bp downstream