rs46793021 SNP Detail

Summary

• ID
  rs46793021
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACACAGCCCT CAGGAGGCAG AGGCAGGCAG TTTTCTATGA
  GTTCGAGGCC AGTCTGGTCT ACATACCAAG TTCCAGGACA GGCAGAGCAC CACACATTAT
  W
  TAAAAAAAAA AAAAAAAAAA AAGCGTAAAT CCGTTTCCCA GAGCCTCAGC ATTCTCTTTG
  GACAGAATGT GTCTACATTC AAGCTTACTG TTCTGTCTTC T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147738271	ENSMUSSNP4359856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46793021					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	282 bp distal
Cpgi2388	CpG island 2388	743 bp proximal
Rr224447	regulatory region 224447	4 bp distal
Rr224448	regulatory region 224448	395 bp proximal
Rr402345	regulatory region 402345	325 bp downstream
Rr402346	regulatory region 402346	468 bp upstream
Spryd4	SPRY domain containing 4	542 bp upstream
Tssr99849	transcription start site region 99849	561 bp upstream
Tssr99850	transcription start site region 99850	513 bp upstream