rs46793220 SNP Detail

Summary

• ID
  rs46793220
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCCATT TGCCTACATC
  ATCAGATGGT GGGACATTAC TGGATTTTTA TGCTGTTATG CAGATCTATA GATTTAAACT
  CATAAAGGGG CATCATGGTG AGTACTGCTG GCCTGGCATA TGTGCTGCCT CTGTTCTTCT
  ACCTTACACC AATATTACTT TTACTGCTCT GCCAGAGTTT GTTTTCCTGA GGCATCCTTC
  M
  TGTACAGTAA GCCACATCTT AGGTTTTAGG GCAGTCAAGC CCCTAAATTC ATAGCTGCTG
  CTTGATTTCA ATGAAGACAA ATAGTGAAAA CCAACTGCAA ACTCTAAAAG TAGGTGTAAG
  GGGGGGAGAG GGAGGGATCT CGGTGGGAAA AGGGTCAGGG AGGAGAAGAG GGGAACATGA
  TCAAATATTG GGTGGGGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936889	NES16189340	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46793220					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936889	NES16189340	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260986 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1247 bp downstream
Tssr58809	transcription start site region 58809	610 bp downstream
Tssr58810	transcription start site region 58810	585 bp downstream
Tssr58811	transcription start site region 58811	496 bp downstream
Tssr63020	transcription start site region 63020	1523 bp upstream
Tssr63021	transcription start site region 63021	1445 bp upstream
Tssr63022	transcription start site region 63022	1406 bp upstream
Tssr63023	transcription start site region 63023	1351 bp upstream
Tssr63024	transcription start site region 63024	1253 bp upstream
Tssr63025	transcription start site region 63025	1221 bp upstream
Tssr63026	transcription start site region 63026	1200 bp upstream
Tssr63027	transcription start site region 63027	1162 bp upstream
Tssr63028	transcription start site region 63028	1137 bp upstream
Tssr63029	transcription start site region 63029	1109 bp upstream
Tssr63030	transcription start site region 63030	1053 bp upstream
Tssr63031	transcription start site region 63031	1023 bp upstream
Tssr63032	transcription start site region 63032	992 bp upstream
Tssr63033	transcription start site region 63033	978 bp upstream
Tssr63034	transcription start site region 63034	952 bp upstream
Tssr63035	transcription start site region 63035	937 bp upstream
Tssr63036	transcription start site region 63036	870 bp upstream
Tssr63037	transcription start site region 63037	837 bp upstream
Tssr63038	transcription start site region 63038	812 bp upstream
Tssr63039	transcription start site region 63039	744 bp upstream
Tssr63040	transcription start site region 63040	700 bp upstream
Tssr63041	transcription start site region 63041	653 bp upstream
Tssr63042	transcription start site region 63042	633 bp upstream
Tssr63043	transcription start site region 63043	616 bp upstream
Tssr63044	transcription start site region 63044	581 bp upstream
Tssr63045	transcription start site region 63045	501 bp upstream
Tssr63046	transcription start site region 63046	488 bp upstream
Tssr63047	transcription start site region 63047	467 bp upstream
Tssr63048	transcription start site region 63048	433 bp upstream
Tssr63049	transcription start site region 63049	409 bp upstream
Tssr63050	transcription start site region 63050	364 bp upstream
Tssr63051	transcription start site region 63051	342 bp upstream
Tssr63052	transcription start site region 63052	1160 bp downstream
Tssr63053	transcription start site region 63053	1270 bp downstream
Tssr63054	transcription start site region 63054	1437 bp downstream
Tssr63055	transcription start site region 63055	1464 bp downstream
Tssr63056	transcription start site region 63056	1505 bp downstream
Tssr63057	transcription start site region 63057	1538 bp downstream