rs46793406 SNP Detail

Summary

• ID
  rs46793406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69002931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATAAGAAG CAACTCCCAA TAAGCTTGCT TATTCTGCCG
  CCCCATGATT CCCTCTTCCA AATTCTGATG CAACAAGAAA GCTCTCACCA GATATGCTGG
  Y
  GCCATGATCT CAGGCTTCCC AGCTTCCAGA GTGATGAGCT AAATTGGCCT CTGTTCTTTC
  CCAATTACTC AGAATATAGT GTTGTCGGAA GCCAACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132349105	ENSMUSSNP1616988	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323727530	CHEV_11_68925607	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46793406					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69002931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	836 bp distal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	1105 bp downstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	1567 bp downstream
Rr402659	regulatory region 402659	1232 bp downstream
Rr449875	regulatory region 449875	361 bp distal
Rr449876	regulatory region 449876	1512 bp distal
Rr449877	regulatory region 449877	within coordinates