rs46793413 SNP Detail

Summary

• ID
  rs46793413
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131229097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACAGGGT CTCCTTATGT
  AGGCAGCTGA GGTTTGCCTT GAACTTAGGA TGGTCCTCCT GCCTCAGCCT CCTCAGTGCT
  AGGGTTACAG GCATGCACTA TCATACCAGG CACTGCAATT CGGAAACTCT GAAGCATTTG
  CAAGGGGTAG AGAACCCCTG TAATTAAAAA GAAGGATGAA AGCTGCTGGG GGAATGGAGC
  K
  TCTGACATTG GATTCCATCT ACTCTGCAGG GAAACAGCCC CCGGGGAACA GCCCCTTCCT
  TTGCTGCCCC AATGAGGAAA CACCCCATCC TTTGATAGGC AGTCATTAAT CTATGGATTA
  AAAAACCCAT ACTTAGCTAC CTCCCTTGAT CCCTTTTGGC ACATGTTGTA AACAGAAGAA
  TATGGCTCCA CGGGGCCAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61066492	NES16063261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46793413					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61066492	NES16063261	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131229097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19823	CpG island 19823	961 bp proximal
Rr656477	regulatory region 656477	875 bp proximal