rs46793587 SNP Detail

Summary

• ID
  rs46793587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119417195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACGCGACT CAGCATTTGA
  GTTCCCCTTT TTCATATGGG TCAAGCTGAC GACCTAGAAT CTTAATGCGG ATTCTCTTCC
  CAATGCTTAC CAATAAGCAA ACGAGAGAGA GAGAGGGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGATTCTTT TCTTTCTTTT CTTCGAGTAC AAGAAGCCAA GAAAAGCAAG
  R
  GATTCCCAGT CAGAAGGTAT CCTTTGGGAC TGTCCGTTTT ATTGGTTGAA ATGTCCGCGC
  ATGCGTATAG TGCGCATTGA GCAAATCTAC GCACACCCTC TCCTCTCCGA TCCTTTCCAT
  ATTCTCTCCA TCACTTCATG CACTGTTTTG TTTTGTTTTT TCTAAGCCCA CTAAGTGGCG
  TGGTGTTGCT GCGCTACGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60832244	NES16024195	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46793587					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60832244	NES16024195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119417195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16447	CpG island 16447	43 bp proximal
Gm31190	predicted gene, 31190	1114 bp downstream