rs46793953 SNP Detail

Summary

• ID
  rs46793953
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16456577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAGGAGG AAGAGCTGGC AGCAGGGCAC AGAGGAAATG
  TTGGGACAAA AGAGGAGGTG GCCCTGGAGA GATTCTCTTG ATGGGAAGAG AGAAGTGAGC
  W
  GCAATCCAGG ACTCAGACAA GGCTCTCTGT GAGGCTGCAG GATTTATGCA GTGTGAGAGA
  GGATGGGTGT GTGTGGTTGG GAAGGGGAAA GCAGGAAAGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60972092	NES16154416	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46793953					SNP	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972092	NES16154416	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16456577 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	within coordinates
Cpgi18385	CpG island 18385	1037 bp proximal
Tssr64618	transcription start site region 64618	693 bp downstream