rs46794935 SNP Detail

Summary

• ID
  rs46794935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30205732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT TTTTTCCTCT TCTACAACTG
  Y
  CATTAATGGG TTTACCATCT CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147925792	ENSMUSSNP5757389	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325129931	CHEV_16_30387000	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46794935					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30205732 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	within coordinates
Cpgi8159	CpG island 8159	892 bp proximal
Gm61087	predicted gene, 61087	1929 bp upstream
Rr514223	regulatory region 514223	188 bp proximal
Rr514224	regulatory region 514224	1606 bp proximal
Rr514225	regulatory region 514225	1963 bp proximal
Rr514226	regulatory region 514226	1976 bp proximal
Tssr140714	transcription start site region 140714	1776 bp downstream
Tssr140715	transcription start site region 140715	1854 bp downstream
Tssr140716	transcription start site region 140716	1892 bp downstream