rs46796567 SNP Detail

Summary

• ID
  rs46796567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTTCC TGGACAGCCA
  GGGCTATACA GAAAAACCCT GTCTCGAAAA CAAAACAAAA CAAAACAAAA GCAAAGCAAA
  ACAAAAGCAA AGCAAAGCTT AAAAGTTCAA AAGCATAAGG ACTGCAGGTC TTTCTTCGAT
  TAGATCCTGG CTGGATGTAT TTCAAACTCT CTTTTTCCTT CACCAGGGTT TGGTACCAGG
  Y
  ACCATGTTGA TAGGCTCTTT GTGTTATTGT ATTGAATGAG ATGGCACACA GCTTGGTCAG
  AATTCTTAGA AATGATTCCA TTACTGGGAG AAACAATAAT TTGTGATAAA ATTACTCAGG
  TTTAAGTCAC TGCACCTTCA TCTAGATTGT CAAAAAGTTC AGGGCCACTC CAGGGCACTT
  GAGGGTAAAG CAAGGTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134665710	ENSMUSSNP6851093	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46796567					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1214 bp proximal
Mtfr1	mitochondrial fission regulator 1	786 bp upstream
Rr397614	regulatory region 397614	1445 bp upstream
Tssr28500	transcription start site region 28500	761 bp upstream
Tssr28501	transcription start site region 28501	780 bp upstream
Tssr28502	transcription start site region 28502	818 bp upstream
Tssr28503	transcription start site region 28503	825 bp upstream
Tssr28504	transcription start site region 28504	1544 bp upstream
Tssr28505	transcription start site region 28505	1558 bp upstream
Tssr28506	transcription start site region 28506	1571 bp upstream
Tssr28507	transcription start site region 28507	1673 bp upstream
Tssr28508	transcription start site region 28508	1685 bp upstream
Tssr28509	transcription start site region 28509	1747 bp upstream