rs46796574 SNP Detail

Summary

• ID
  rs46796574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118172880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTTCAA ATCTGTAAGA
  CAAGATGTCG TCCACGAAGG ACAAGCTGAA GATCCTTCCT CCGATCTCTT TGAAGCCTAG
  AAACCTTCCT GCTTCAAAGC CTGCGATGTT CCGTTGGCCC CAGCGTCTGC TGCCTTCACA
  CTGGCACCTG TCTTTGGAAA CTTAGAGGAA GGCGGGAACA GGCAGGAAAT TGTTTGGGAA
  Y
  AGCAGATCTT TTTCATAGTT TGTATTCAAT ACTATTGGTT TTGGAATTAT AAGAACAAAA
  TGCCACAGGT AGAGGTGTGT GTGTGTGTGT GTGTTTGTGT GCTCCACCTT GAGTGACTGT
  TGCCCACTAT TAATAGATGT GGGGAAAGCA CGTCGTGACT AAGCACCATC ACTCACTCCA
  CTGTGCAGTT TCAATGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61231097	NES16848761	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46796574					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61231097	NES16848761	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118172880 () rs orientation: forward

Symbol	Name	Function Class
Gm33088	predicted gene, 33088	220 bp upstream