rs46800161 SNP Detail

Summary

• ID
  rs46800161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68734216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGACTGTCA ATGGCCAGGC CAGCTCTCAA GCAAAAATCA
  CAGCCAATGA AACTGAAGTA GCTATCACAT GGATTTGCTG CTATTCCATG ACTTCTGAAA
  W
  TGTGGAAAGA GACAAATATG CTTATACTTT TCATATAACA TTCTCAGAAT TCTACCACTG
  AGCTACATTG AATAGCCAAC CTTTTTTTTT TTTAAAGAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62444774	NES17256934	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T		A	A	A	A
ss139658669	ENSMUSSNP2025575	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46800161					SNP	A	A	A	A	A	A	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62444774	NES17256934	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68734216 () rs orientation: forward

Symbol	Name	Function Class
Adam7	a disintegrin and metallopeptidase domain 7	569 bp downstream
Gm31227	predicted gene, 31227	within coordinates
Tssr129424	transcription start site region 129424	1251 bp downstream