rs46800425 SNP Detail

Summary

• ID
  rs46800425
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39296685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGATA TTAAAGGCAG
  ATGATTGTTA GTTCCTGTTA TGTTTATTGT TGTAGGTGGC ATCATCTGCA TGTGATTCTC
  TCATTTTGGT TTTGTTATGA GATGATTAAT ACCTTGTTTT TTATTTGGTG TATATACTAT
  TATATGTATT GTGGCACATA ATTAATTCCA AGCTCTAGGG AGGTAAAGAC AGGTGGACAT
  A
  TGGTAGAGGC AGGTGGATAT CTGTGAGTTC CAATTTGGTC TTTGAGTTCT TGCAGATGCA
  GGGCTATGTA GAGAGAGCCT AACCCCAAAA CAAAACAAAA ACCGAAGAGG AAATAGACAC
  ATACATACAA ACATACATAC ATACAGAGAG AGAGAGAGAG AGAGGGAGAG AGAGAGAGAG
  AGAGTGAGAG AGAGAGAACC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147663774	ENSMUSSNP4197695	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46800425					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39296685 () rs orientation: forward

Symbol	Name	Function Class
Rims2	regulating synaptic membrane exocytosis 2	within coordinates
Tssr131153	transcription start site region 131153	1008 bp upstream
Tssr131154	transcription start site region 131154	1034 bp upstream
Tssr131155	transcription start site region 131155	1062 bp upstream
Tssr131156	transcription start site region 131156	1278 bp upstream