rs46800892 SNP Detail

Summary

• ID
  rs46800892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATGACA TGGCACGTCT
  CAGGAATGTG TATCATCTGA ATCGGCTGAG TTCAGACTGC CTTCCTGTCC CACATTTTTC
  TGTGTCTGTT GCTCCCAACT ATTTCGCACT TCCTGTTGCT CCTCCTCCTA CTTGCTGAGT
  GACCACACAC TGCTTCCCAT GGTCTGTATC AACAACTAGA GTCTGTTGGT CTTTCCGAGG
  Y
  GCTGTCTGTG AGCATGTCCC CTTAGCCATC CACCTCTGTG AGAACCTGCT TTCTGGTCTG
  ATTTGACTCT TAGCGAAGCT AAATGTTCAC GCACCGTCTT TGGCAACCGA AGACTTTACA
  TTTTTGTCTG AAATCAGCTG TCCACATGTG TATGGATGGA TCTTTCTGTT CTCTTCTGGT
  GAGTCTCTTT GGTTTGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146436960	ENSMUSSNP5149223	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320177547	CHEV_1_187410302	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46800892					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318620 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1034 bp distal
Rr425415	regulatory region 425415	1223 bp proximal