rs46803174 SNP Detail

Summary

• ID
  rs46803174
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134101598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGGGGGCC AGAAGAGGGC ATCAGATTCA CTGGAACTGA
  AGTTAGAGAT AATTGCGAGC TGCCATGTGG GTTCTAGGAA CCAAACCTGG GTTCACTGTA
  A
  AAAAAAAAAA AAGAGCTCTG AGCCATTCTT CCAGCCTACC ATCCATACCT TTAACCACTA
  AACAGGCAAT GTGCAGAGTG AGATGGGCCC TCTCCTCTA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147527552	ENSMUSSNP6978911	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46803174					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134101598 () rs orientation: forward

Symbol	Name	Function Class
Extl1	exostosin-like glycosyltransferase 1	1705 bp upstream
Rr601652	regulatory region 601652	1404 bp distal
Rr601653	regulatory region 601653	75 bp distal
Tssr43896	transcription start site region 43896	1726 bp upstream
Tssr43897	transcription start site region 43897	1698 bp upstream