rs46804478 SNP Detail

Summary

• ID
  rs46804478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163442809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGTGGA CTTGAAGTCA
  GCCTAGATTA CATCAAGTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC ACTCACACAC
  ACACACAAAG AGAGAGAGAA AGAGAGAGAG AAAGAGAGAG AGGGAGAGAG AACACAGAGG
  GGGTATTCAG GACTCAGTCA GTTGCCGTTG TGACAACAGA AGCAAGATGT CGGAGTGATG
  Y
  GGGGAAGACC ATGGACCAAA TAATACCAGT AGCTCAGTAG CTTCTGCAAG TTGGAAAAGA
  GAACCAGTAC CCAGAGAGAC AGCAGCCTTC CCAGCTCCCC GGTGTCTTTA GCAAAGCAAC
  AAAATACATT TGTGTTATTT GAAGTCACTA TGTAGTAATT TGTTATAAAT GGAACAGGAA
  ACTAACACTT AGATTTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148206365	ENSMUSSNP7065842	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46804478					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163442809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	1109 bp proximal
Rr397464	regulatory region 397464	1650 bp upstream
Rr569431	regulatory region 569431	1182 bp distal
Rr569432	regulatory region 569432	1439 bp distal
Rr569433	regulatory region 569433	59 bp proximal
Rr569434	regulatory region 569434	935 bp proximal
Rr569435	regulatory region 569435	1123 bp proximal
Rr569436	regulatory region 569436	1319 bp proximal
Rr569437	regulatory region 569437	1444 bp proximal
Tssr21475	transcription start site region 21475	1405 bp upstream
Tssr21476	transcription start site region 21476	1442 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	1425 bp upstream