rs46805737 SNP Detail

Summary

• ID
  rs46805737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77739362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGCTGAGT GGCTCCCTAG GTCCACTGTG CCAGTTTCTA
  TACTGTAACC TGTTCGGCTC CGGCTGGGTT TTAATCTGGG ACTCTAACGG AAGGGCCATG
  R
  GAGCGTTGTG CAGCAGCCTT GGGTGCATAC CCTGAATGGC AGTGTCTGGA GCAGGGTAGG
  CTCCTTATTA CACCCCACTG ACAACACAGG CACATAGCCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss52384827	NES15270428	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs46805737					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52384827	NES15270428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77739362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	105 bp distal
Gm53590	predicted gene, 53590	within coordinates
Gm66732	predicted gene, 66732	within coordinates
Gm66819	predicted gene, 66819	129 bp downstream
Lrrc3	leucine rich repeat containing 3	992 bp upstream
Rr434596	regulatory region 434596	1142 bp distal
Rr434597	regulatory region 434597	1003 bp distal
Rr434598	regulatory region 434598	21 bp distal
Rr434599	regulatory region 434599	within coordinates
Tssr98252	transcription start site region 98252	1067 bp upstream
Tssr98253	transcription start site region 98253	999 bp upstream