rs46806229 SNP Detail

Summary

• ID
  rs46806229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153629477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG CATTTCCCAA GGAAAAGGCA
  Y
  TGAGGACCAT GGAGACCCCG GATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60819905	NES16430910	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	C	T	T	T	T	T	C
ss145749430	ENSMUSSNP3445783	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46806229					SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819905	NES16430910	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153629477 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	1967 bp downstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396400	regulatory region 396400	1734 bp downstream
Tssr9483	transcription start site region 9483	1855 bp downstream
Tssr9484	transcription start site region 9484	1824 bp downstream
Tssr9485	transcription start site region 9485	1731 bp downstream
Tssr9486	transcription start site region 9486	1697 bp downstream
Tssr9487	transcription start site region 9487	929 bp downstream
Tssr9488	transcription start site region 9488	900 bp downstream
Tssr9489	transcription start site region 9489	863 bp downstream
Tssr9490	transcription start site region 9490	740 bp downstream