rs46806596 SNP Detail

Summary

• ID
  rs46806596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91367067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA TGAGAATGAA AAGTGTCTAG
  R
  ATTCTAAGCA GATTCGTAAA ACCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52458800	NES15442056	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		A	G	G	A		A
ss324117494	CHEV_12_92638733	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46806596					SNP	G	G	G	G	G	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52458800	NES15442056	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91367067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4953	CpG island 4953	90 bp proximal
Rr258556	regulatory region 258556	within coordinates
Rr265753	regulatory region 265753	within coordinates
Tshr	thyroid stimulating hormone receptor	700 bp upstream
Tssr114585	transcription start site region 114585	145 bp upstream
Tssr114586	transcription start site region 114586	173 bp upstream
Tssr114587	transcription start site region 114587	697 bp upstream
Tssr114588	transcription start site region 114588	731 bp upstream