rs46806749 SNP Detail

Summary

• ID
  rs46806749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59037042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCCCCC CCCCTTTTTG
  GGACTCCAAT AATATTAACT ATTTTCTATA ACTCGATTAC TGCCCTTATT ATGTAAACAT
  CCAGCTAAAG GGCTAGCCAG TTCTGCACAG TCTTGCATTT CTCTCCTATT CATGCATAAA
  TTACATTTTT TATTAGTCAT AGTCATTGTA TGCTAGAGAC AAGGAAATAG ATTGGGAGCC
  R
  GATGGTTTCT CTGAGTACTA GTCTTGCCCT TTAATTAGAC AAGTCACCTT GACTCTGAAA
  CTTGCTAAAC TCAGTTTCAG ATTGGTAAGA CAGAGACATA CAGAGATTTT TTTTTCCAGT
  GTCCCCTGCC TATTCGGAAC ACCCAGTGAC CTGACGATCT GACAGCATGT GTTCCAAGTC
  TTAAAGGTGG AGGACAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415195	NES15910251	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46806749					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415195	NES15910251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59037042 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577320	regulatory region 577320	865 bp proximal
Rr577321	regulatory region 577321	991 bp proximal
Rr577322	regulatory region 577322	1395 bp proximal
Rr577323	regulatory region 577323	1696 bp proximal
Tssr33381	transcription start site region 33381	910 bp downstream
Tssr33382	transcription start site region 33382	953 bp downstream
Tssr33383	transcription start site region 33383	989 bp downstream
Tssr33384	transcription start site region 33384	1008 bp downstream
Tssr33385	transcription start site region 33385	1025 bp downstream
Tssr33386	transcription start site region 33386	1059 bp downstream
Tssr33387	transcription start site region 33387	1129 bp downstream
Tssr33388	transcription start site region 33388	1441 bp downstream
Tssr33389	transcription start site region 33389	1462 bp downstream
Tssr33390	transcription start site region 33390	1501 bp downstream
Tssr33391	transcription start site region 33391	1606 bp downstream