rs46808511 SNP Detail

Summary

• ID
  rs46808511
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165507004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCGAGGGC AAACTGCTCT TGCAGAGAAC CTGGGGTTCA
  GATCCCAGCA CCCACATGGG TGGCTCCCAA ACCTCTATAA CTCTAGCGCC GACGAATTCG
  W
  CGCCCTCTTC TGGACTCTGG GGGTACTGCA TGCACAGGGT GCACAGATAA ACAAGCAAAA
  CACTCATACA CATAGGAAAA AAAATAAATC ATTTTTAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146004973	ENSMUSSNP3623310	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46808511					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165507004 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	within coordinates
Rr13802	regulatory region 13802	1597 bp proximal
Tssr14776	transcription start site region 14776	592 bp upstream
Tssr14777	transcription start site region 14777	495 bp upstream