rs46809069 SNP Detail

Summary

• ID
  rs46809069
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCATATTT CTTGCTAAGT GGATCCTCCA GTAAATTAGA
  TGTGAGTGTC AGGATTTTAC CATTTTGAAT CTGAATGTTC AGCTGATTGT CTAAGTCCAG
  G
  ACATGACTCC TTAGCTCCCA GATCCATTGA CTATACATGG TTTCCAGTTT GCTCATGGCT
  ATGACCTCTT GGGTGTTCCT GAAACTGAAA ATGAAGTTT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145614849	ENSMUSSNP1744906	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322371916	CHEV_7_113649876	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46809069					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105569 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74128	transcription start site region 74128	1938 bp upstream
Tssr74129	transcription start site region 74129	1407 bp upstream
Tssr74130	transcription start site region 74130	1358 bp upstream
Tssr74131	transcription start site region 74131	1147 bp upstream
Tssr74132	transcription start site region 74132	971 bp upstream
Tssr74133	transcription start site region 74133	314 bp upstream
Tssr74134	transcription start site region 74134	59 bp upstream
Tssr74135	transcription start site region 74135	within coordinates
Tssr74136	transcription start site region 74136	56 bp downstream
Tssr74137	transcription start site region 74137	122 bp downstream
Tssr74138	transcription start site region 74138	152 bp downstream
Tssr74139	transcription start site region 74139	186 bp downstream
Tssr74140	transcription start site region 74140	241 bp downstream
Tssr74141	transcription start site region 74141	641 bp downstream
Tssr74142	transcription start site region 74142	784 bp downstream