rs46809310 SNP Detail

Summary

• ID
  rs46809310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61762078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGCTGT GCTCATGGTG
  TCTCTTCACA GCAATAGAAC ACAGACTAAG ACATCGGTCA TTGCAGCTTT CTGCTGAAGA
  GCGTACACAC GACTCTTTCT ACTGTCGATC AGCAGGGACT GGCATGGGAG ACAAGATCTG
  GCACTTGAGT CACCTGGGGT TAGAGCTCTT TCTTGACTTC CCAAGAAGGC CTGGCTCTAG
  Y
  GTTGTTGGGC AGCAGAAAGG CTCCCAGCAT GCTTTACACC AGATGCAGGA TAGTTTTGTA
  TTAGCTTTTC CTCCTTTCCC CACCCAGCTG TGCAGACTGG CAGAGAGATG GCTGGGGACG
  AAGCTGCGTT GACTCACTGC TTGCCTGGCA TGCAGAAGGC CCTTGGTTTT ATCCCCAACA
  TTGCAGGAAC TTATCACGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61280634	NES16779758	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss323330214	CHEV_10_61389047	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46809310					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280634	NES16779758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61762078 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr223137	regulatory region 223137	299 bp distal
Rr384795	regulatory region 384795	1891 bp upstream