rs46809859 SNP Detail

Summary

• ID
  rs46809859
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78067203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAATCCCC AGCACCACAA TCACAACAAT GAAACAGCCT
  TAAAGAGAAA GACCCATAAG CTAGGGGAGG CCACTGTTGA TCAGTCTGCA CTCCAGAACA
  S
  AGAGGCACTA CTGCTGGAGC ACCTATTCAA TCACTCAAGC TCCTGAATTA CAGGACAAGT
  CCAGCCAAAA CACAGAGCCT GTACCTTCTC CATTCCATTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52382264	NES15267175	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46809859					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52382264	NES15267175	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78067203 () rs orientation: forward

Symbol	Name	Function Class
D10Mit139	DNA segment, Chr 10, Massachusetts Institute of Technology 139	1291 bp proximal
D10Mit139.1	DNA segment, Chr 10, Massachusetts Institute of Technology 139.1	1405 bp proximal
Trappc10	trafficking protein particle complex 10	within coordinates