rs46809975 SNP Detail

Summary

• ID
  rs46809975
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47261149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCACTGT TTTGATACCA TTCTCATCCG TTCCTTTATA
  AGTACCGAAT CCTCTGTCCA TCATAACAGG CCTGCCATCT TGAAGACGAG ACTGTAGTTG
  M
  GACATTAAGC AAAAATACAT AGATTGTGTG GTAGTGATGC AGCAGTCACA GGGGGATCTG
  GAGTACCAGC AGGGGGGCTT TCCTTTTAAA AGGTCAGTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148985307	ENSMUSSNP1776937	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324335509	CHEV_13_47203041	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46809975					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47261149 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	813 bp distal
Dek	DEK proto-oncogene	1472 bp upstream
Rr479039	regulatory region 479039	1237 bp distal
Rr479040	regulatory region 479040	615 bp distal
Rr479041	regulatory region 479041	1076 bp proximal
Tssr119627	transcription start site region 119627	1262 bp downstream
Tssr119628	transcription start site region 119628	1243 bp downstream
Tssr122372	transcription start site region 122372	1971 bp upstream
Tssr122373	transcription start site region 122373	1926 bp upstream
Tssr122374	transcription start site region 122374	1798 bp upstream
Tssr122375	transcription start site region 122375	1563 bp upstream
Tssr122376	transcription start site region 122376	1545 bp upstream
Tssr122377	transcription start site region 122377	1502 bp upstream
Tssr122378	transcription start site region 122378	1467 bp upstream
Tssr122379	transcription start site region 122379	1452 bp upstream
Tssr122380	transcription start site region 122380	1440 bp upstream