rs46810421 SNP Detail

Summary

• ID
  rs46810421
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24714229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATGTGAC ATAAATGTTA GTCACTTTAT TTCTTTTAAA
  AGCTATGTCT CGAGCTGGAG AGATGGCTCA GCAGTTAAGA GCACTGACTG CTCTTCCAGA
  A
  GTCCTGAGTT CAATTTCCAG CACCCACGTG GTGGCTCACA ACCATCTGTA ACAGGATATG
  ATTCCCTTTT CTGGCACACA GGTGCGCATG CAGACAGAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148095119	ENSMUSSNP5936783	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46810421					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24714229 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	620 bp distal
Rr608341	regulatory region 608341	1513 bp proximal
Rr608342	regulatory region 608342	1586 bp proximal
Rr608343	regulatory region 608343	1766 bp proximal