rs46811269 SNP Detail

Summary

• ID
  rs46811269
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122296144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA TTCTTGCCGA GGTGATTGTA
  K
  TCGTGAACCT CACGTTAGGC TTCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147010242	ENSMUSSNP197658	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss324857816	CHEV_14_122457954	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46811269					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122296144 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	668 bp upstream
Gm63496	predicted gene, 63496	1455 bp downstream
Rr404309	regulatory region 404309	1982 bp upstream
Rr498317	regulatory region 498317	679 bp distal
Rr498318	regulatory region 498318	358 bp distal
Rr498319	regulatory region 498319	1910 bp proximal
Tssr127312	transcription start site region 127312	366 bp downstream
Tssr130315	transcription start site region 130315	649 bp upstream