rs46812078 SNP Detail

Summary

• ID
  rs46812078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126934574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTACT GGTCTTGGGG
  TCCAGCTGTA GTCCCGCATC CTCCATTTCC TCTCAGCGAG TCCAGGTGCT GTTGCACACC
  AGGCTGGAGG GATGAAGTCT GGAATGTGTA GGGTCTGCAG AACCACCTGA TAGTGCCGGC
  CAGGAGAAGG CCTTCTCAGA GGGTCTTAGT GTTGCAGCTC ATTTAGATGA TACTCAATGA
  R
  AAAGCTCTAT TAGATGATGT CCAGTGGACA GCTGATGCAC ATACACTTTA TTCGCAGTGA
  TCAAGGGCTA TATATGAACC TTAGAGAGCG GGAAGGAGTT TTCAGGGTGA ATGTAAAATC
  ATTGGTTGGC GCTTAATGTA TTGCGAATGC CTCATTTACA TGGAAAGGCA TTCCAGGGAT
  CCAGCTACTT ATTGCATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss145879596	ENSMUSSNP6611872	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs46812078					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126934574 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	264 bp downstream
Tssr69201	transcription start site region 69201	1821 bp downstream
Tssr69202	transcription start site region 69202	1777 bp downstream
Tssr69203	transcription start site region 69203	1735 bp downstream
Tssr69204	transcription start site region 69204	1567 bp downstream
Tssr69205	transcription start site region 69205	654 bp downstream
Tssr74988	transcription start site region 74988	263 bp upstream