rs46812769 SNP Detail

Summary

• ID
  rs46812769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31216719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGATTGC CTAACAGACA
  CGGGATCGCG GGGGGGCTAA GGAGGTGACG GAGCTGATCC GGAGAGGCCG GGGTTTCTGA
  TCGTACCCAT AAACTGAAGG AAGCGTCGTC GGCCAGGAGA ACTGAAATCC TCTCATCGCA
  ACCATGGAGC GAAGTAGGGG GAAGGGTGAC TGAGGTCCCG AGAACCGTCA TCGCTCTCTG
  R
  ACCCTCGGAT AAAGCAGGCC GCTAGGGTCT CGGGCATGTC CAGGGACACT CATACCTACA
  TTCAAACTCG CGTCCACTCA GTTCCCCACG CTCTGAGCTC CCAGGGTCCC CAGCAAAGAA
  CAGGTCAGGG CGCACTCACC CGTCAGTCAA GCCCAGGCGT CGGCAGCAGA ATCTTCTAGC
  TGACCTGGGC TCCTCCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709809	NES15559257	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46812769					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709809	NES15559257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31216719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	within coordinates
Eaf1	ELL associated factor 1	317 bp upstream
Gm63056	predicted gene, 63056	496 bp upstream
Mettl6	methyltransferase 6, methylcytidine	within coordinates
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	395 bp downstream
Tssr124944	transcription start site region 124944	303 bp upstream
Tssr124945	transcription start site region 124945	335 bp upstream
Tssr124946	transcription start site region 124946	1655 bp upstream
Tssr127965	transcription start site region 127965	497 bp upstream
Tssr127966	transcription start site region 127966	198 bp downstream
Tssr127967	transcription start site region 127967	230 bp downstream