rs46813010 SNP Detail

Summary

• ID
  rs46813010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79992139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT GTTAGGTTCA GATGCCCAAG
  R
  TAACAGAGAC TGACCCTGTG AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61023706	NES16108737	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	G	G	A	G		G	G	A	G		A
ss322281157	CHEV_7_87487277	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46813010					SNP	G	A	A	A	G	G	G	G	A	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61023706	NES16108737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79992139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1893 bp distal
Cpgi19332	CpG island 19332	492 bp proximal
Hddc3	HD domain containing 3	713 bp upstream
Rr400403	regulatory region 400403	1990 bp downstream
Rr400404	regulatory region 400404	552 bp upstream
Rr649870	regulatory region 649870	1682 bp distal
Rr649872	regulatory region 649872	1354 bp distal
Rr649873	regulatory region 649873	232 bp proximal
Rr649874	regulatory region 649874	676 bp proximal
Tssr67435	transcription start site region 67435	700 bp upstream
Tssr67436	transcription start site region 67436	774 bp upstream
Unc45a	unc-45 myosin chaperone A	1391 bp upstream