rs46813146 SNP Detail

Summary

• ID
  rs46813146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174314498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCTGTC AGGTATCAGT
  CAGGAAACTC CAGGATACCC TGGATACGTC GGCGCTCAGG ACACCCCAAA ACCCTGTGAA
  GCCCTCGGGC CTCGTGCTCT GTGACCCCTG GAGTCACTTC CGGATCAGGC TCGACGGCCC
  GCTCTTGTCT TCCGTCAGTG GCGACGGTGT GGGAGGAATT CCCAGGCCTG GGGACAGGGA
  R
  CCCTAGCTCG GGTCGGGGTC GTGACCTTGG CGATCCCCCC GAGTCCCGAG CTCCGCTTGT
  CTCGCTACAC CCGACGCCAG GAAGTTCCCC GAGGGCGCCG GAGGCGGGCG CCGCACCCAC
  ACTCACTCAA AGACGTGCTC CGAAGTCCAG ATCTTCATGG TGCCAGCTGC CTGCCCGGTG
  TCCCTCAGTG TCCGGGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343932	ENSMUSSNP4941189	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320627896	CHEV_2_174298206	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46813146					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174314498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	384 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	172 bp upstream
Rr572131	regulatory region 572131	1778 bp distal
Rr572132	regulatory region 572132	1389 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	82 bp distal
Rr572135	regulatory region 572135	183 bp proximal
Rr572136	regulatory region 572136	292 bp proximal
Rr572137	regulatory region 572137	366 bp proximal
Rr572138	regulatory region 572138	491 bp proximal
Tssr28035	transcription start site region 28035	173 bp downstream
Tssr28036	transcription start site region 28036	244 bp downstream