rs46813438 SNP Detail

Summary

• ID
  rs46813438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:5272276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACTATTT CCTTTCTTTC
  TTCCTTTCTT CCTTTCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT CCTCCCTCCC
  TCCCTCCCTC CCTCTCTCTC CCACCCCCTT TCCCTCTATC CCTTCCTCTC CCTCCCTCCC
  TCCCTTTCTT TAAGTGATAA ACCCTCGGCT AGCCTTAGCC TCAGCATCAT CTTGCTTTAT
  Y
  TTCTGGCGTG TGCTCCACTA AAGCCACTAT GGTTCCATCA ACCTTGATAA GACAATTGGT
  TCTCTGGGAC CTTTGTCTTT AGCCCAGCAG AGCTGCCACA CCATTGAAAG CAGAGTGTCT
  CATCTCATGA CCCTTAGGGC CCTGCCCTGA CATACTGCAT AAGTTCCCCT GAGCTGCCCT
  GGCCTATGGA AGGGGTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61341854	NES16953078	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46813438					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61341854	NES16953078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:5272276 () rs orientation: forward

Symbol	Name	Function Class
Klhl29	kelch-like 29	within coordinates
Rr263718	regulatory region 263718	1347 bp proximal
Rr267587	regulatory region 267587	277 bp distal