rs46813903 SNP Detail

Summary

• ID
  rs46813903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59038274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCCTTT GCTCCGAGGG
  TTGCGTCATA ACCCAGCTGC ACTTGTCCCC TTCACAGGAT CAGATAACTC CTTTTAACCC
  CATCTCTGCT ACTGCACACT GCTATTCTGC ATCAGCCTGA GAGCTTGCTT AAAAGAGGAA
  CTCCCAATTC CTAGTCCGTG AGCCCACAGA AGAAAATCAT GCTTCATTAC CTTGCTGAAC
  R
  TAGGGAAAGT CCAGTCTCAC CTATAAATCC AGTGTTCCAT TCATCACATA GGAACAATTT
  CGGAGACTCA AAGTGCAGAA AGCCATCTTA CTTTGGGATT ACCTGTAGTC TTTGACTCTA
  CCCTGAACTG GATGGAATTT TCCTACTTAC CAATTCTTCT GGCCTCCACA GTCCCTGTAG
  GTAAGATTGG TTCAGCGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415185	NES15910269	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46813903					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415185	NES15910269	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59038274 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Tssr29228	transcription start site region 29228	1012 bp upstream
Tssr29229	transcription start site region 29229	1442 bp upstream
Tssr33381	transcription start site region 33381	310 bp upstream
Tssr33382	transcription start site region 33382	250 bp upstream
Tssr33383	transcription start site region 33383	225 bp upstream
Tssr33384	transcription start site region 33384	213 bp upstream
Tssr33385	transcription start site region 33385	193 bp upstream
Tssr33386	transcription start site region 33386	162 bp upstream
Tssr33387	transcription start site region 33387	89 bp upstream
Tssr33388	transcription start site region 33388	209 bp downstream
Tssr33389	transcription start site region 33389	230 bp downstream
Tssr33390	transcription start site region 33390	269 bp downstream
Tssr33391	transcription start site region 33391	374 bp downstream