rs46814398 SNP Detail

Summary

• ID
  rs46814398
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106339418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC TCCAGCAGCT CTCAGGCCAC
  A
  CCGTTCCCTT TGCATCACCC AGTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136936736	ENSMUSSNP1492376	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323185263	CHEV_9_106364550	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46814398					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106339418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	267 bp proximal
Gpr62	G protein-coupled receptor 62	1743 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Tssr86911	transcription start site region 86911	1573 bp downstream
Tssr86912	transcription start site region 86912	1562 bp downstream
Tssr86913	transcription start site region 86913	1521 bp downstream
Tssr86914	transcription start site region 86914	324 bp downstream
Tssr86915	transcription start site region 86915	934 bp upstream
Tssr86916	transcription start site region 86916	1038 bp upstream
Tssr86917	transcription start site region 86917	1161 bp upstream
Tssr86918	transcription start site region 86918	1294 bp upstream
Tssr86919	transcription start site region 86919	1564 bp upstream