rs46815019 SNP Detail

Summary

• ID
  rs46815019
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCAGAT GTGCTCATTT
  TTTTTATAAC CATTTATTTT TACATAAAGA ATTACATCTT GGCTGAATAT TTGATAATAC
  AGGACACACA AACATATTTT TCATAGTTGT TTAATATTTT TATTTTATAG GTAACAGCAT
  CGAGAATACT GCACTGTGTA AGTACTTAGC ACAAAGAACA GGCACATAAT TCAGAGACAA
  W
  CAATAATTAC TGGAGGGCAT ATTAATCTGA TACTTACAAG CTGTGGGTGC ATGGCAGGGA
  AACGCTAACA CGCTCTGTTT TCTGTAGTTA AATTACTACT TGTCTAGAAA AGCAGGAAAC
  TCGTCACGTC CTGTGAAAAC ACTTAAGATC AGAACTCTGG AGTCTGAGCA GAGGTGCCAA
  AGTCAGTGTT CATTGACACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145238576	ENSMUSSNP2343356	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46815019					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574515 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1373 bp upstream
Gm59893	predicted gene, 59893	847 bp downstream
Rr369776	regulatory region 369776	1520 bp upstream
Rr395952	regulatory region 395952	216 bp upstream
Rr486370	regulatory region 486370	within coordinates
Rr486371	regulatory region 486371	52 bp proximal
Rr486372	regulatory region 486372	894 bp proximal
Rr486373	regulatory region 486373	1395 bp proximal
Tssr121117	transcription start site region 121117	167 bp upstream
Tssr121118	transcription start site region 121118	246 bp upstream
Tssr124051	transcription start site region 124051	58 bp downstream