rs46815202 SNP Detail

Summary

• ID
  rs46815202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24936343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACATGA GTATGATGGT
  GGAGGTCATA TGCGTGCCAG AGCAAGTCTT CATGGGGAAA CCCAGCTAGC CCCTCCTTTC
  TGTCTGGAGG CATAAAGTGG GCATTACAGT GAGCTTTTTG CTCCAAGCTG AAGCTAGGGA
  CTTCAGACAC ATGGAGCCAG GGCACACACA TGCTTAGTGT CCTAGACTTT GTAATTGAGT
  Y
  TTATAGCCAT TGGAACCCAG CTTTTGGTAG ACTTTCCCAT TCTTGGCCAC AGGAATGAGC
  CCCCAGCCTC ACCTACCTGC ATTCCCGACA TACCTGGCTA GCCACCTGAA GATGCACTTT
  TTACAGAAGA TGTGACTGCA CGGCAACCTC GTTGGCCTCT TGAGAACCCC ATGGCAGACA
  GAACACAGGA ACTTGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60552593	NES16570687	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C		C	C	C	C		C
ss325333211	CHEV_17_24854314	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46815202					SNP	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552593	NES16570687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24936343 () rs orientation: forward

Symbol	Name	Function Class
Rnf151	ring finger protein 151	within coordinates
Rr339329	regulatory region 339329	1257 bp proximal
Tssr143066	transcription start site region 143066	719 bp upstream
Tssr146774	transcription start site region 146774	637 bp downstream
Tssr146775	transcription start site region 146775	682 bp downstream