rs46817580 SNP Detail

Summary

• ID
  rs46817580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46037745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGCAG GTGCTTTCAC
  CATAGCAGTT CTGAGGTTGA CCTGGTCTCC CCTTCCCTAG CCCCCAGCCC TAGAGTATTG
  GGAAGTGTAC CTGAGACACC TTACTACTCC ACAGCTATTT CAGAGTTTTC TCTGCAGTGA
  GGACCCCTCT GAAAGGGAGA AACAGATCAG CTGCTAACTC CAGGAGCTTG TGACGAGGGA
  Y
  GGCCTTGCTT TCTTTTGTTC CAGCCTTTGC TCTTGGTTAG AGGTTCTTTC CAGTCATAAA
  CGGGGCTCTG AACTGAATAG CTCCACTCTG CCCAAGATAG TCCCTTCTTC CCTGAGCTCT
  GGAGGGGCAG AGGGAGATGT GACCTCTGTG GGCAGCTTAC GTTATGCCCC TTGTGACTGT
  AGATCTTGGT TCTGCCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259585	NES15753068	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46817580					SNP	T	T	C	C	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259585	NES15753068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46037745 () rs orientation: forward

Symbol	Name	Function Class
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	1945 bp distal
Rr331487	regulatory region 331487	56 bp proximal
Rr339881	regulatory region 339881	344 bp distal