rs46819863 SNP Detail

Summary

• ID
  rs46819863
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGGGAG GGGGGAATGC
  ATATTTCTAT TTCCATTCCT GTGATAAGAA AAGAAAGTAA TGGGGTTTCC AAGGCTCCTC
  CTCTCCAGTG CCCCCACACT GAAGTCACAG TGTGGCTGCC ACACCCACAT TTTATATGGT
  GCTGGGGTTC AGAACTCAGC CATTCATCCT TGTGCAGCCA GGGCCTTCCA CTGAGCCTCC
  K
  CAGTCCCTTC TTATCTTTGT CCCTTTGAGA CAAGGTTTTA CCTTGTAGCC CAGGCAAGTC
  CCCAACTCAC AGCAACCTCC ATGCCTCAAT CTTCGTATTC CTGGGGTTAC AAATACGAGC
  CACCACAGAT GGCTTTAAAT TGGAACGCTG TTAGGTAAAC CATGTTTTAT TCTAATTTCA
  TTATGGTATA TTGTAATGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135862686	ENSMUSSNP2506086	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320953869	CHEV_3_127112816	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46819863					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203547 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	983 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	942 bp distal
Rr584774	regulatory region 584774	349 bp distal
Tssr35571	transcription start site region 35571	1011 bp upstream
Tssr35572	transcription start site region 35572	917 bp upstream
Tssr35573	transcription start site region 35573	890 bp upstream
Tssr35574	transcription start site region 35574	855 bp upstream
Tssr35575	transcription start site region 35575	834 bp upstream