rs46819973 SNP Detail

Summary

• ID
  rs46819973
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133092333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC CACCCCCACC CCGTTTCCAC
  T
  TTTTCTTTAA AGTTGTCTGA CTTGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319979079	CHEV_1_135061172	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46819973					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133092333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	within coordinates
Plekha6	pleckstrin homology domain containing, family A member 6	within coordinates
Rr28535	regulatory region 28535	within coordinates
Tssr211	transcription start site region 211	650 bp downstream
Tssr8784	transcription start site region 8784	674 bp downstream
Tssr8785	transcription start site region 8785	556 bp downstream