rs46820017 SNP Detail

Summary

• ID
  rs46820017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115063019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAACCAA AAAAAAAAAA
  AAAAAAAAAA AATGCCAGGA CCAGATGGCC TTAGATGAAT CCTACCAAAC ATTTAGAGTT
  AGGCCATCCA TTCTGGATTG GCCTAGTTTG CCAGATGATG CCCAATGCCA AAGCAAGAAC
  AGATTTAAAA AAAGACTAGC ATCCTGTATA AATATTGGCT CAAATTTTCT CAAACACTAG
  Y
  GCAGCAAATG CCACGGCACA TCCTAAGGAT GACACATGAC AATAATCAAG TTTCTTCTTA
  GACAGCAAGG GTGGCTGAAT GCAGGAAGAA CGAAAATATC AGCACAGCAT ACCACGTTCA
  CACGGAAACA AACTAGTCAT CTGAGCCCAT GCAGAGGCAG CATTTGACAA GATTCAGTAC
  CGTCCACGAT CAAAACAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137004667	ENSMUSSNP6415869	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46820017					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115063019 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	193 bp downstream
Osbpl10	oxysterol binding protein-like 10	1726 bp downstream