rs46820281 SNP Detail

Summary

• ID
  rs46820281
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164148101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGAATTA TTGTGCTACA
  TATATTTAGA TCCAGCATTT TCGTTTTGTC TCAAATCCAT TTCTTCTCTT AGAATTGAGC
  TTAGTTGATA GGTGTCATGC ATTCCCTGCG GGTAGTCTTT GCCCCGTTTT ACCTAACACC
  GCGTCAACTG TTCTGTAAGG CGCTAGCCAA GGACCACGGG TAAGGGGCCT GAGGCGGGGG
  M
  GGGGGAGCTT TAGAGTCTTT CCAGAAAAAC ATAACAAAAT ATTTTTTGAG TCTTTTAAAA
  TATTGAATAT TTGATTTTTG CCATCTTACC AAGATCTATC TATCGAATGT GTATTTCCTT
  CTTTGGATCT TTATTTCAGT ATTTGTTTGA TGTTTCAAAG ATCTCAGAAC TACACATGCC
  AATAAGGACT TTCAAAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145976454	ENSMUSSNP3047846	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46820281					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164148101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422185	regulatory region 422185			363 bp distal
Rr422186	regulatory region 422186			210 bp proximal
Rr422187	regulatory region 422187			762 bp proximal