rs46822006 SNP Detail

Summary

• ID
  rs46822006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8472589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGGTAAG ATACAGAACT
  GGTATTTTTC TCCAGCATCT ACAGATACAT TTGACCTATT AAAATGACAC CTCGCTCATT
  ACACAGTCAA ACATCATGGT ACAAACAGCC AATGACAATC CTGGGACTCA CTAAGATCTG
  CCCTGACAAG AAAGGATGGC ACCTTCTATG TGTGTATATG TATGTGTGTT TTAAACCTCC
  S
  AAAGATTCTA AGTGCAACTT AACTTCTATC CTTTGAAAGA AAATAGGTTT CATCCTTATC
  TCCATGTACG CTCAAAAACA CTTAGAATTC TTTGTATTCT TGCACCCGTT TAGGCTAAAA
  AGTATCCAGA GAGTTTTATG TAGTCATTTA AAATTATCCT TACATAACAG ATACAAATAC
  AAAGTGTCGG AGTAAACCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147049424	ENSMUSSNP5222073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46822006					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8472589 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	381 bp proximal
Nipbl	NIPBL cohesin loading factor	within coordinates
Rr369900	regulatory region 369900	within coordinates
Rr499033	regulatory region 499033	571 bp distal
Rr499034	regulatory region 499034	within coordinates
Rr499035	regulatory region 499035	1348 bp proximal
Tssr4546	transcription start site region 4546	1760 bp downstream
Tssr130591	transcription start site region 130591	500 bp upstream
Tssr130592	transcription start site region 130592	1628 bp upstream
Tssr130593	transcription start site region 130593	1860 bp upstream
Tssr133664	transcription start site region 133664	1059 bp downstream
Tssr133665	transcription start site region 133665	1113 bp downstream
Tssr133666	transcription start site region 133666	1330 bp downstream
Tssr133667	transcription start site region 133667	1344 bp downstream
Tssr133668	transcription start site region 133668	1504 bp downstream