rs46822988 SNP Detail

Summary

• ID
  rs46822988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCAGTT GCTAAAGCAG
  GTCAAACCAA AGAGAGCTTA CCTGTTGCTT GGACAGACAC ACTACATTTC TCTGTTTTTT
  TCCTGTTCTG AGTGCCATTG AATTCTGCTC TTACCATTAT GTTTTTCTCC TGTCTGCTGG
  GTTTTGCACT TTGTAGACAG CCCTAGACCT TCAGAGGCCT TCTCTGAGAT TTGCTACTCC
  R
  TGGGAAGTTT CTCCTTGTGG AACTTTTCTT CTGGCATAGC TTCTGAGCAG CCTCCCTGCA
  TCTCACATTC CTCCCCACCC CCCACCCCAC CCCCCTTTGT TCTTTTTGAC ACTAGGGACA
  GTCCAGGGCC CTGTACATGC TAGGTGGGCA CTCTATCCTG AGCTGCAGCT GGGCTTCTGG
  AAGTTCATTG CTCCAAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63158199	NES17453827	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	G		A	A	A		A
ss325658624	CHEV_18_66082159	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46822988					SNP	A	A	G	A	A	A	G	A	A	G	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63158199	NES17453827	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055576 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	137 bp downstream
Gm50119	predicted gene, 50119	1551 bp downstream
Gm58551	predicted gene, 58551	822 bp upstream
Rr346799	regulatory region 346799	within coordinates
Rr346800	regulatory region 346800	1825 bp proximal
Rr353052	regulatory region 353052	175 bp distal
Rr393825	regulatory region 393825	1708 bp upstream