rs46823629 SNP Detail

Summary

• ID
  rs46823629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31222665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTTACT TCTGTGATTT
  CTCCTTCCTA ACCTTTGATG ATCTTGTACC TCTCTGCATT TTCTTGTGCA ACAATCCCTC
  GGATTCATGC TCAGGCTGGG AGCTGAAATT CAGGCTCAGG TGGAACTAGG TTTCTGATAA
  GTGAGCAAGG GAGTCCACAG GTAGGACCTG GCTGGTGTTT CTCAACTCTT GCTTTTCATC
  Y
  GAGCACTGGG AAAATAAAGG CTTAGGCACA GTCACCAAGG ACACACACAC ACACACACAC
  ACACACACAC ACACAGAGTC ATTGACCCAA GAGTGTTCCG GGCAGGGGCG GGGAGGTCCA
  CAAATGATTG CTAACCTAGG TTCTGAGACC CAGGTGGGGA TCCTTGGGTA GCTGCTGGCC
  TAGGCTCAGG AACCACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60562809	NES16493371	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46823629					SNP	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562809	NES16493371	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31222665 () rs orientation: forward

Symbol	Name	Function Class
Tssr143635	transcription start site region 143635	1749 bp downstream
Umodl1	uromodulin-like 1	within coordinates