GCCTCAGAAA CTAAGAGGGG AGGGCTCTCA ACAAAGGAGC CATGTGGCCC ACCCTCTCTG CTCCCTGTGG CTGCCAAGGA TAAACTGCAG AGGGTTGAGC AGCCACAGCT GCTGCAGCTG CTGAGGATGA CAGCTGAGGG GTCACATACT GCATAGATCT TCTGCAGTAC GTGAGGAGAG AGACCCACGG TCCCCAGACT Y TCAGGCTGAG CACCTGGAAG CTGGAGTGGA GCCAGTACAG GAGCTGGAAG AACTGTGTCC ATAGCAACAG GTAGTTGGAG AGGTCTGGCT GATGGACAGC TGGGATTATG AGTACTTCCG GCTCCAGGAC CAGGAAGATG GATGGCTCAG TCAAAACGCT TGCTGCCCAG CCTAATGACT GGAGTTCAAT CCCCAGGACC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61718128 | NES17662577 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs46824486 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61718128 | NES17662577 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr12:110951320 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm48630 | predicted gene, 48630 | 488 bp downstream | ||||||
Gm51959 | predicted gene, 51959 | within coordinates | ||||||
Gm60603 | predicted gene, 60603 | 488 bp downstream | ||||||
Tssr3954 | transcription start site region 3954 | 519 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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