rs46826200 SNP Detail

Summary

• ID
  rs46826200
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88188223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCAGATGCAT GCATAGACAC TGTGAAGCGC TACACCTGGG
  AGACGGTACT CACACAAAGC CTACCCTTCC CCTTTCTCAG AGACCCGAGA TTATCAGTGT
  T
  TGGGCCACTG GATCAGGAGT CTAGTGGGGC CCGCCCGGAA CAGTTTGGTG GGGCAACCAA
  AAGGGTAATT AGTCCCATGG CTAGAAATCT GGAAGGGGAA G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144898956	ENSMUSSNP2597847	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46826200					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88188223 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	1970 bp downstream
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	1223 bp distal
Rr18062	regulatory region 18062	1378 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1376 bp downstream
Tssr7959	transcription start site region 7959	1356 bp downstream
Tssr7960	transcription start site region 7960	1333 bp downstream
Tssr7961	transcription start site region 7961	1304 bp downstream
Tssr7962	transcription start site region 7962	1144 bp downstream
Tssr7963	transcription start site region 7963	1114 bp downstream
Tssr7964	transcription start site region 7964	1087 bp downstream
Tssr7965	transcription start site region 7965	1063 bp downstream